Pondicherry has 7 Private and Deemed Medical Colleges offering MBBS Course and accepting NEET UG, among these 7 Private medical Colleges 2 are Private Minority Medical Colleges. The best Private Medical Colleges in Pondicherry are Pondichherry Institute of Medical Sciences & Research (Chrishtian Minority), Sri Manakula Vinayagar Medical College & Hospital, Sri Venkateshwara Medical College, Hospital & Research Centre (Telugu Minority). In Pondicherry total 1450 MBBS Seats available in Private Medical Colleges.
| S.No | College Name | University | Management | Estd | Seats |
| 1 | Aarupadai Veedu Medical College, Pondicherry | Vinayaka Missions University (Deemed), Salem | Trust | 1999 | 150 |
| 2 | Mahatma Gandhi Medical College & Research Institute, Pondicherry | Sri Balaji Vidyapeeth (Deemed University), Pondicherry | Trust | 2002 | 250 |
| 3 | Sri Lakshmi Narayana Institute of Medical Sciences, Pondicherry | Bharath Institute of Higher Education & Research (Deemed Univ.), Chennai | Trust | 2006 | 250 |
| 4 | Vinayaka Missions Medical College, Karaikal, Pondicherry | Vinayaka Missions University (Deemed), Salem | Trust | 1997 | 150 |
| Total Number of MBBS Seats | 800 | ||||
| S.No | College Name | University | Management | Estd | Seats |
| 1 | Pondichherry Institute of Medical Sciences & Research (Chrishtian Minority) | Pondicherry University | Trust | 2000 | 150 |
| 2 | Sri Manakula Vinayagar Medical College and Hospital | Pondicherry University | Trust | 2006 | 250 |
| 3 | Sri Venkateswaraa Medical College, Hospital & Research Centre, Pondicherry (Telugu Minority) | Pondicherry University | Trust | 2007 | 250 |
| Total Number of MBBS Seats | 650 | ||||